Chuiqin/irgsea

WebAug 1, 2024 · chuiqin/irGSEA/) in R software was used. This package was. used to score individual cells using multiple gene set enrichment. methods and generate a multiple gene set enrichment score. matrix.

irGSEA.ridgeplot: Ridge plot Easy to show the data distribution by ...

WebirGSEA.score.Rd Input a Seurat object or scRNA-seq matrix, calculate the enrichment scores of AUCell, UCell, singscore and ssgsea. Then, return a Seurat object including … WebPostdoctoral Fellow, Luo Lab; Contact Info. Name reaching up high https://justjewelleryuk.com

(PDF) Single-cell RNA sequencing reveals TCR+ macrophages in …

WebAug 22, 2024 · Introduction. Acute pancreatitis (AP) is a clinically common critical and acute disease that occurs in approximately 13 million people worldwide every year ().With the exacerbation of alcohol abuse and obesity worldwide, the morbidity of … WebJul 26, 2024 · chuiqin/irGSEA: The integration of single cell rank-based gene set enrichment analysis The integration of single cell rank-based gene set enrichment … WebJul 26, 2024 · chuiqin/irGSEA: The integration of single cell rank-based gene set enrichment analysis The integration of single cell rank-based gene set enrichment analysis. Meanwhile, you are easy to visualize the results. Getting started README.md Browse package contents Vignettes Man pages API and functions Files how to start a successful etsy store

Calculate enrichment scores from scRNA-seq data — irGSEA.score

Category:Frontiers Single-cell RNA sequencing reveals TCR+ macrophages …

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Chuiqin/irgsea

Releases · chuiqin/irGSEA · GitHub

WebOct 23, 2024 · GSEA的输入文件是一个表达矩阵，我们需要提前把样本进行分组，然后对所有基因基于分组来进行排序，那么这个时候我们最常使用的排序方式就是通过LogFC的大小来进行排序（从大到小），这种排序天生就具有了一种属性即可以表示两组间基因的表达量变化趋势，排序之后的基因列表其顶部可以看作是上调的差异基因，其底部可以看作是下调 … WebSep 1, 2024 · Microglia-specific transcriptional repression of DNA repeats after chronic stress. (A) Genome distribution of down-regulated genes (down_genes, red vertical bars) and DNA repeats (blue vertical bars).

Chuiqin/irgsea

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WebStress-induced neuroinflammation is considered an important mechanism in the pathogenesis of depression. As immune effector cells in the brain, microglia play an essential role in ... WebJul 26, 2024 · chuiqin/irGSEA The integration of single cell rank-based gene set enrichment analysis Package index Search the chuiqin/irGSEA package Vignettes README.md Functions 21 Source code 3 Man pages 11 irGSEA.barplot: Stacked bar plot irGSEA.bubble: Bubble plot irGSEA.densityheatmap: Density heatmap

WebGitHub - chuiqin/irGSEA: The integration of single cell rank-based gene set enrichment analysis chuiqin / irGSEA Fork master 1 branch 1 tag chuiqin fix the bug of plot … WebJan 31, 2024 · Single cell RNA sequencing (scRNA-seq) provides a better understanding of cellular behavior in the context of complex tumor microenvironments by analyzing individual cell populations. Methods The Cancer Genome Atlas (TCGA) and Gene Expression Omnibus (GEO) data was employed to investigate the metabolic pathways in HCC.

WebJul 26, 2024 · chuiqin/irGSEA / irGSEA.halfvlnplot: Half vlnplot irGSEA.halfvlnplot: Half vlnplot In chuiqin/irGSEA: The integration of single cell rank-based gene set enrichment analysis View source: R/plot.R irGSEA.halfvlnplot R Documentation Half vlnplot Description Easy to show the data distribution by half vlnplot Usage WebA list after perform irGSEA.integrate. method: A character. It should be one of the followling : AUCell, UCell, singscore, ssgsea or RRA. Default RRA. upset.width: Width of the whole upset plot. Default 13. upset.height: ... Developed by Chuiqin Fan. Site built with ...

WebA list after perform irGSEA.integrate. method: A character. It should be one of the followling : AUCell, UCell, singscore, ssgsea or RRA. Default RRA. top: The top gene sets. Default 50. show.geneset: A vector including special gene sets. Default NULL. ...

WebJul 26, 2024 · chuiqin/irGSEA irGSEA.integrate: Integrate differential gene set calculated by all enrichment... irGSEA.integrate: Integrate differential gene set calculated by all … how to start a successful skincare businessWebJul 26, 2024 · In chuiqin/irGSEA: The integration of single cell rank-based gene set enrichment analysis. View source: R/plot.R. irGSEA.ridgeplot: R Documentation: Ridge plot Easy to show the data distribution by ridge plot Description. Ridge plot Easy to show the data distribution by ridge plot Usage how to start a summary exampleWebMar 30, 2024 · The single-sample gene set enrichment analysis (ssGSEA) method was used to construct CAFs related score system CafS. Estimation of immune infiltration We used ssGSEA method and CIBERSORT algorithm ( Newman et al., 2015) to evaluated absolute abundance of multiple immune cell populations. how to start a successful consulting businessWebOct 27, 2024 · The prognosis of human papillomavirus (HPV)-infected head and neck squamous cell carcinoma (HNSCC) is often better than that of HPV ⁻ cancer, which is possibly caused by the differences in their ... reaching unreached nations ministriesWebReleases · chuiqin/irGSEA. irGSEA 1.1.3. 08 Apr 08:15 . chuiqin. V1 c42f07f. Compare. Choose a tag to compare. Could not load tags. Nothing to show {{ refName }} default. View all tags. irGSEA 1.1.3 Latest. Latest. This version of irGSEA only supports AUCell, UCell, singscore and ssgsea. Assets 3. All reactions. how to start a successful fashion lineWebIn chuiqin/irGSEA: The integration of single cell rank-based gene set enrichment analysis View source: R/main.R irGSEA.score R Documentation Calculate enrichment scores … reaching up while pregnantWebQichun County (simplified Chinese: 蕲春 县; traditional Chinese: 蘄春 縣; pinyin: Qíchūn Xiàn) is a county of eastern Hubei province, People's Republic of China. It is under the … reaching up learning