Footprintdb数据库
WebDec 29, 2024 · footprintDB:查转录因子、靶基因,我都行. 转录因子(Transcription factors)是一群能与基因特定序列专一性结合,从而保证目的基因以特定的强度在特定的时间与空间表达的蛋白质分子。. 转录因子通过识别特定的DNA序列来控制染色质和转录,以形成指导基因组表达 ... http://www.biotrainee.com/thread-1215-1-1.html
Footprintdb数据库
Did you know?
WebJan 4, 2024 · 进入footprintDB主页(http://floresta.eead.csic.es/footprintdb/index.php),可见该数据库最新版本于2024年12月2日更新,目前收录来自包括JASPAR在内的19个数据 … WebAug 6, 2024 · 2.主页面介绍. 如下是Jaspar主页面,左边是工具栏;中间显示的是数据库中收录的六大类生物,可点击查看每个大类中收集的数据总量;右侧是用户使用导航,第一次使用的用户可以点击JASPAR interactive tour ,可跟随该导航一步步学习网站的使用方法。
WebSearch footprintDB for individual entries using keywords. With the following formulary you can search individual database entries: - Transcription Factors - DNA-binding motifs - DNA-binding sites. If you want to search biological sequences or DNA motifs in the database, we encourage you to use the Sequence Search Form. WebfootprintDB是一个转录因子综合数据库,收录了8754个去冗余的转录因子,整合了JASPAR在内的9个数据库的9350个转录因子、13682个DNA motifs和35058个DNA结合 …
WebJun 28, 2016 · FootprintDB integrates some of the most comprehensive freely available libraries of curated DNA binding sites and systematically annotates the binding interfaces … WebSep 3, 2024 · 手把手带你用UCSC查找心仪基因转录因子. UCSC(University of California Santa Cruz)作为生物领域里常用的 数据库 之一,整合了各 大数据 库的基因注释、基因表达、调控、变异等等各种基因组数据信息,不仅可以可视化浏览和数据挖掘,还能下载用于生信分析的fasta ...
WebFootprintDB is a database and search engine that compiles regulatory sequences from open access libraries of curated DNA cis-elements and motifs, and their associated …
WebAnimalTFDB is a comprehensive database including classification and annotation of genome-wide transcription factors (TFs), and transcription cofactors in 97 animal genomes. The TFs are further classified into 73 families based on their DNA-binding domain (DBD) and cofactors are classified into 83 families and 6 categories. You can browse by. university of texas sigma chiWebfootprintDB - 非常好用,当你有一段能结合DNA的蛋白序列(NCBI上通常有),就能搜出具有类似motif的TF。 什么是motif: motif是比较有特征的短序列,会多次出现的,一般认为它的生物学意义重大,做完CHIP-seq分析之后,一般都会寻找motif 。 rebuild t84 transmissionWebNov 14, 2013 · The most populated species among footprintDB sources, as compared with TRANSFAC and JASPAR CORE, are shown in Figure 1A, together with the corresponding number of TF sequences annotated in each data source (full statistics are reported as Supplementary Material).We notice that the TF binding preferences of a few organisms … rebuild table oracleWebJan 15, 2014 · The first release contains 2422 unique TF sequences, 10 112 DNA binding sites and 3662 DNA motifs. A survey of the included data sources, organisms and TF families was performed together with proprietary database TRANSFAC, finding that footprintDB has a similar coverage of multicellular organisms, while also containing … rebuild tcp/ip stackhttp://bioinfo.life.hust.edu.cn/AnimalTFDB/#!/ rebuild table saw motorWebNov 5, 2024 · footprintDB是一个综合性的转录因子数据库,通过整合多个转录因子相关的数据库,最终构建出一个非冗余的数据集,在该数据库中,存储了transcription factors, … rebuild tailwind cssWebA new feature in footprintDB is the possibility to refer any Transcription factor, DNA motif or site with the following URL format: … rebuild tcm